Mohammad M. Salary and Hossein Mosallaei
Optical forces can be used to manipulate small particles through various mechanisms. In this work, we present a comprehensive analysis of optical forces acting onto the nanoparticles located over a substrate using different manipulation techniques, as well as the conditions of the optimization of these forces. In particular, we study optical trapping, acceleration, and binding. Calculations are carried out using the exact multipole expansion method combined with Maxwell stress tensor formalism, providing a general framework to study optical forces on particles for arbitrary incident fields using closed-form expressions. The method takes into account multiple-scattering between the particles and substrate, and allows clear predictive abilities well beyond the dipole model We consider the interaction of dielectric and metallic nanoparticles with various substrates. The presence of substrate is shown to have a significant impact on the nanoparticles resonances and provides an additional degree of freedom in tailoring the optical forces. We explore different physical processes contributing to the optical force and their interplay on the mobility of the particle. It is established that engineering layered substrates can broaden the scope of trapping and acceleration, and enhance the binding forces. It can also provide a high tunability of the acceleration direction. The analysis presented in this paper provides key physical insights to identify optimum setup for nanoparticles manipulation in various applications.
DOI
Friday, July 8, 2016
Cell-sized liposome doublets reveal active tension build-up driven by acto-myosin dynamics
V. Caorsi, J. Lemière, C. Campillo, M. Bussonnier, J. Manzi, T. Betz, J. Plastino, K. Carvalho and C. Sykes
Cells modulate their shape to fulfill specific functions, mediated by the cell cortex, a thin actin shell bound to the plasma membrane. Myosin motor activity, together with actin dynamics, contributes to cortical tension. Here, we examine the individual contributions of actin polymerization and myosin activity to tension increase with a non-invasive method. Cell-sized liposome doublets are covered with either a stabilized actin cortex of preformed actin filaments, or a dynamic branched actin network polymerizing at the membrane. The addition of myosin II minifilaments in both cases triggers a change in doublet shape that is unambiguously related to a tension increase. Preformed actin filaments allow us to evaluate the effect of myosin alone while, with dynamic actin cortices, we examine the synergy of actin polymerization and myosin motors in driving shape changes. Our assay paves the way for a quantification of tension changes triggered by various actin-associated proteins in a cell-sized system.
DOI
Cells modulate their shape to fulfill specific functions, mediated by the cell cortex, a thin actin shell bound to the plasma membrane. Myosin motor activity, together with actin dynamics, contributes to cortical tension. Here, we examine the individual contributions of actin polymerization and myosin activity to tension increase with a non-invasive method. Cell-sized liposome doublets are covered with either a stabilized actin cortex of preformed actin filaments, or a dynamic branched actin network polymerizing at the membrane. The addition of myosin II minifilaments in both cases triggers a change in doublet shape that is unambiguously related to a tension increase. Preformed actin filaments allow us to evaluate the effect of myosin alone while, with dynamic actin cortices, we examine the synergy of actin polymerization and myosin motors in driving shape changes. Our assay paves the way for a quantification of tension changes triggered by various actin-associated proteins in a cell-sized system.
DOI
Thursday, July 7, 2016
Characterisation of optically driven microstructures for manipulating single DNA molecules under a fluorescence microscope
Kyohei Terao; Chihiro Masuda; Ryo Inukai; Murat Gel; Hidehiro Oana; Masao Washizu; Takaaki Suzuki; Hidekuni Takao; Fusao Shimokawa; Fumikazu Oohira
Optical tweezers are powerful tools for manipulating single DNA molecules using fluorescence microscopy, particularly in nanotechnology-based DNA analysis. We previously proposed a manipulation technique using microstructures driven by optical tweezers that allows the handling of single giant DNA molecules of millimetre length that cannot be manipulated by conventional techniques. To further develop this technique, the authors characterised the microstructures quantitatively from the view point of fabrication and efficiency of DNA manipulation under a fluorescence microscope. The success rate and precision of the fabrications were evaluated. The results indicate that the microstructures are obtained in an aqueous solution with a precision ∼50 nm at concentrations in the order of 106 particles/ml. The visibility of these microstructures under a fluorescence microscope was also characterised, along with the elucidation of the fabrication parameters needed to fine tune visibility. Manipulating yeast chromosomal DNA molecules with the microstructures illustrated the relationship between the efficiency of manipulation and the geometrical shape of the microstructure. This report provides the guidelines for designing microstructures used in single DNA molecule analysis based on on-site DNA manipulation, and is expected to broaden the applications of this technique in the future.
DOI
Optical tweezers are powerful tools for manipulating single DNA molecules using fluorescence microscopy, particularly in nanotechnology-based DNA analysis. We previously proposed a manipulation technique using microstructures driven by optical tweezers that allows the handling of single giant DNA molecules of millimetre length that cannot be manipulated by conventional techniques. To further develop this technique, the authors characterised the microstructures quantitatively from the view point of fabrication and efficiency of DNA manipulation under a fluorescence microscope. The success rate and precision of the fabrications were evaluated. The results indicate that the microstructures are obtained in an aqueous solution with a precision ∼50 nm at concentrations in the order of 106 particles/ml. The visibility of these microstructures under a fluorescence microscope was also characterised, along with the elucidation of the fabrication parameters needed to fine tune visibility. Manipulating yeast chromosomal DNA molecules with the microstructures illustrated the relationship between the efficiency of manipulation and the geometrical shape of the microstructure. This report provides the guidelines for designing microstructures used in single DNA molecule analysis based on on-site DNA manipulation, and is expected to broaden the applications of this technique in the future.
DOI
Dynamics of an optically confined nanoparticle diffusing normal to a surface
Perry Schein, Dakota O'Dell, and David Erickson
Here we measure the hindered diffusion of an optically confined nanoparticle in the direction normal to a surface, and we use this to determine the particle-surface interaction profile in terms of the absolute height. These studies are performed using the evanescent field of an optically excited single-mode silicon nitride waveguide, where the particle is confined in a height-dependent potential energy well generated from the balance of optical gradient and surface forces. Using a high-speed cmos camera, we demonstrate the ability to capture the short time-scale diffusion dominated motion for 800-nm-diam polystyrene particles, with measurement times of only a few seconds per particle. Using established theory, we show how this information can be used to estimate the equilibrium separation of the particle from the surface. As this measurement can be made simultaneously with equilibrium statistical mechanical measurements of the particle-surface interaction energy landscape, we demonstrate the ability to determine these in terms of the absolute rather than relative separation height. This enables the comparison of potential energy landscapes of particle-surface interactions measured under different experimental conditions, enhancing the utility of this technique.
DOI
Here we measure the hindered diffusion of an optically confined nanoparticle in the direction normal to a surface, and we use this to determine the particle-surface interaction profile in terms of the absolute height. These studies are performed using the evanescent field of an optically excited single-mode silicon nitride waveguide, where the particle is confined in a height-dependent potential energy well generated from the balance of optical gradient and surface forces. Using a high-speed cmos camera, we demonstrate the ability to capture the short time-scale diffusion dominated motion for 800-nm-diam polystyrene particles, with measurement times of only a few seconds per particle. Using established theory, we show how this information can be used to estimate the equilibrium separation of the particle from the surface. As this measurement can be made simultaneously with equilibrium statistical mechanical measurements of the particle-surface interaction energy landscape, we demonstrate the ability to determine these in terms of the absolute rather than relative separation height. This enables the comparison of potential energy landscapes of particle-surface interactions measured under different experimental conditions, enhancing the utility of this technique.
DOI
Resonant optical propulsion of a particle inside a hollow-core photonic crystal fiber
A. V. Maslov
Resonant propulsion of small nonresonant particles inside metal waveguides due to the formation of resonant states by the guided modes below their cutoffs has been predicted in the past. Here it is shown that stable resonant propulsion exists in hollow-core photonic crystal fibers, which are all-dielectric structures and are a major platform for various photonic applications. Specific features of the resonant propulsion are discussed together with the fiber design issues. The results may enable power-efficient transport of particles over long distances, particle sorting, and sensitive detection.
DOI
Resonant propulsion of small nonresonant particles inside metal waveguides due to the formation of resonant states by the guided modes below their cutoffs has been predicted in the past. Here it is shown that stable resonant propulsion exists in hollow-core photonic crystal fibers, which are all-dielectric structures and are a major platform for various photonic applications. Specific features of the resonant propulsion are discussed together with the fiber design issues. The results may enable power-efficient transport of particles over long distances, particle sorting, and sensitive detection.
DOI
Directed Binding of Gliding Bacterium, Mycoplasma mobile, Shown by Detachment Force and Bond Lifetime
Akihiro Tanaka, Daisuke Nakane, Masaki Mizutani, Takayuki Nishizaka, Makoto Miyata
Mycoplasma mobile, a fish-pathogenic bacterium, features a protrusion that enables it to glide smoothly on solid surfaces at a velocity of up to 4.5 µm s−1 in the direction of the protrusion. M. mobile glides by a repeated catch-pull-release of sialylated oligosaccharides fixed on a solid surface by hundreds of 50-nm flexible “legs” sticking out from the protrusion. This gliding mechanism may be explained by a possible directed binding of each leg with sialylated oligosaccharides, by which the leg can be detached more easily forward than backward. In the present study, we used a polystyrene bead held by optical tweezers to detach a starved cell at rest from a glass surface coated with sialylated oligosaccharides and concluded that the detachment force forward is 1.6- to 1.8-fold less than that backward, which may be linked to a catch bond-like behavior of the cell. These results suggest that this directed binding has a critical role in the gliding mechanism.
DOI
Mycoplasma mobile, a fish-pathogenic bacterium, features a protrusion that enables it to glide smoothly on solid surfaces at a velocity of up to 4.5 µm s−1 in the direction of the protrusion. M. mobile glides by a repeated catch-pull-release of sialylated oligosaccharides fixed on a solid surface by hundreds of 50-nm flexible “legs” sticking out from the protrusion. This gliding mechanism may be explained by a possible directed binding of each leg with sialylated oligosaccharides, by which the leg can be detached more easily forward than backward. In the present study, we used a polystyrene bead held by optical tweezers to detach a starved cell at rest from a glass surface coated with sialylated oligosaccharides and concluded that the detachment force forward is 1.6- to 1.8-fold less than that backward, which may be linked to a catch bond-like behavior of the cell. These results suggest that this directed binding has a critical role in the gliding mechanism.
DOI
Wednesday, July 6, 2016
Fano Resonance-Assisted Plasmonic Trapping of Nanoparticles
Noor Uddin, Guangqing Du, Feng Chen, Yu Lu, Qing Yang, Hao Bian, Jiale Yong, Xun Hou
Plasmonic optical trapping is widely applied in the field of bioscience, microfluidics, and quantum optics. It can play a vital role to extend optical manipulation tools from micrometer to nanometer scale level. Currently, it is a challenge to obtain the highly stable optical trapping with low power and less damage. In this paper, we propose Fano resonance-assisted self-induced back-action (FASIBA) method, through which a single 40-nm gold particle can be trapped in hole-slit nano-aperture milled on metallic film. It is used to achieve ultra-accurate positioning of nanoparticle, metallic nanostructures at wide infrared wavelength range, quite effectively and evidently. The stable plasmonic trapping is achieved by tuning the transmission wavelengths and modifications of nanoslit, indicating that the depth of potential well can be increased from minus 8KT to 12KT, with the input power of 109 W/m2. This can be attributed to great modifications in Fano resonance transmissions according to self-induced back-action (SIBA) theory. The results are basically helpful to facilitate the trapping with lower power and less damage to the objects, which enables new scenario for the treatment of undesirable spread of a single nanoscale creature, such as virus.
DOI
Plasmonic optical trapping is widely applied in the field of bioscience, microfluidics, and quantum optics. It can play a vital role to extend optical manipulation tools from micrometer to nanometer scale level. Currently, it is a challenge to obtain the highly stable optical trapping with low power and less damage. In this paper, we propose Fano resonance-assisted self-induced back-action (FASIBA) method, through which a single 40-nm gold particle can be trapped in hole-slit nano-aperture milled on metallic film. It is used to achieve ultra-accurate positioning of nanoparticle, metallic nanostructures at wide infrared wavelength range, quite effectively and evidently. The stable plasmonic trapping is achieved by tuning the transmission wavelengths and modifications of nanoslit, indicating that the depth of potential well can be increased from minus 8KT to 12KT, with the input power of 109 W/m2. This can be attributed to great modifications in Fano resonance transmissions according to self-induced back-action (SIBA) theory. The results are basically helpful to facilitate the trapping with lower power and less damage to the objects, which enables new scenario for the treatment of undesirable spread of a single nanoscale creature, such as virus.
DOI
Osmotic Bulk Modulus of Charged Colloids Measured by Ensemble Optical Trapping
Joseph Junio, Joel A. Cohen, and H. Daniel Ou-Yang
The optical-bottle technique is used to measure osmotic bulk moduli of colloid suspensions. The bulk modulus is determined by optically trapping an ensemble of nanoparticles and invoking a steady-state force balance between confining optical-gradient forces and repulsive osmotic-pressure forces. Osmotic bulk moduli are reported for aqueous suspensions of charged polystyrene particles in NaCl solutions as a function of particle concentration and ionic strength, and are compared to those determined by turbidity measurements under the same conditions. Effective particle charges are calculated from the bulk moduli and are found to increase as a function of ionic strength, consistent with previously reported results.
DOI
The optical-bottle technique is used to measure osmotic bulk moduli of colloid suspensions. The bulk modulus is determined by optically trapping an ensemble of nanoparticles and invoking a steady-state force balance between confining optical-gradient forces and repulsive osmotic-pressure forces. Osmotic bulk moduli are reported for aqueous suspensions of charged polystyrene particles in NaCl solutions as a function of particle concentration and ionic strength, and are compared to those determined by turbidity measurements under the same conditions. Effective particle charges are calculated from the bulk moduli and are found to increase as a function of ionic strength, consistent with previously reported results.
DOI
Mechanisms of small molecule–DNA interactions probed by single-molecule force spectroscopy
Ali A. Almaqwashi, Thayaparan Paramanathan, Ioulia Rouzina and Mark C. Williams
There is a wide range of applications for non-covalent DNA binding ligands, and optimization of such interactions requires detailed understanding of the binding mechanisms. One important class of these ligands is that of intercalators, which bind DNA by inserting aromatic moieties between adjacent DNA base pairs. Characterizing the dynamic and equilibrium aspects of DNA-intercalator complex assembly may allow optimization of DNA binding for specific functions. Single-molecule force spectroscopy studies have recently revealed new details about the molecular mechanisms governing DNA intercalation. These studies can provide the binding kinetics and affinity as well as determining the magnitude of the double helix structural deformations during the dynamic assembly of DNA–ligand complexes. These results may in turn guide the rational design of intercalators synthesized for DNA-targeted drugs, optical probes, or integrated biological self-assembly processes. Herein, we survey the progress in experimental methods as well as the corresponding analysis framework for understanding single molecule DNA binding mechanisms. We discuss briefly minor and major groove binding ligands, and then focus on intercalators, which have been probed extensively with these methods. Conventional mono-intercalators and bis-intercalators are discussed, followed by unconventional DNA intercalation. We then consider the prospects for using these methods in optimizing conventional and unconventional DNA-intercalating small molecules.
DOI
There is a wide range of applications for non-covalent DNA binding ligands, and optimization of such interactions requires detailed understanding of the binding mechanisms. One important class of these ligands is that of intercalators, which bind DNA by inserting aromatic moieties between adjacent DNA base pairs. Characterizing the dynamic and equilibrium aspects of DNA-intercalator complex assembly may allow optimization of DNA binding for specific functions. Single-molecule force spectroscopy studies have recently revealed new details about the molecular mechanisms governing DNA intercalation. These studies can provide the binding kinetics and affinity as well as determining the magnitude of the double helix structural deformations during the dynamic assembly of DNA–ligand complexes. These results may in turn guide the rational design of intercalators synthesized for DNA-targeted drugs, optical probes, or integrated biological self-assembly processes. Herein, we survey the progress in experimental methods as well as the corresponding analysis framework for understanding single molecule DNA binding mechanisms. We discuss briefly minor and major groove binding ligands, and then focus on intercalators, which have been probed extensively with these methods. Conventional mono-intercalators and bis-intercalators are discussed, followed by unconventional DNA intercalation. We then consider the prospects for using these methods in optimizing conventional and unconventional DNA-intercalating small molecules.
DOI
Active dynamics of colloidal particles in time-varying laser speckle patterns
Silvio Bianchi, Riccardo Pruner, Gaszton Vizsnyiczai, Claudio Maggi & Roberto Di Leonardo
Colloidal particles immersed in a dynamic speckle pattern experience an optical force that fluctuates both in space and time. The resulting dynamics presents many interesting analogies with a broad class of non-equilibrium systems like: active colloids, self propelled microorganisms, transport in dynamical intracellular environments. Here we show that the use of a spatial light modulator allows to generate light fields that fluctuate with controllable space and time correlations and a prescribed average intensity profile. In particular we generate ring-shaped random patterns that can confine a colloidal particle over a quasi one-dimensional random energy landscape. We find a mean square displacement that is diffusive at both short and long times, while a superdiffusive or subdiffusive behavior is observed at intermediate times depending on the value of the speckles correlation time. We propose two alternative models for the mean square displacement in the two limiting cases of a short or long speckles correlation time. A simple interpolation formula is shown to account for the full phenomenology observed in the mean square displacement across the entire range from fast to slow fluctuating speckles.
DOI
Colloidal particles immersed in a dynamic speckle pattern experience an optical force that fluctuates both in space and time. The resulting dynamics presents many interesting analogies with a broad class of non-equilibrium systems like: active colloids, self propelled microorganisms, transport in dynamical intracellular environments. Here we show that the use of a spatial light modulator allows to generate light fields that fluctuate with controllable space and time correlations and a prescribed average intensity profile. In particular we generate ring-shaped random patterns that can confine a colloidal particle over a quasi one-dimensional random energy landscape. We find a mean square displacement that is diffusive at both short and long times, while a superdiffusive or subdiffusive behavior is observed at intermediate times depending on the value of the speckles correlation time. We propose two alternative models for the mean square displacement in the two limiting cases of a short or long speckles correlation time. A simple interpolation formula is shown to account for the full phenomenology observed in the mean square displacement across the entire range from fast to slow fluctuating speckles.
DOI
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