Wednesday, April 19, 2017

Photonic and Plasmonic Nanotweezing of Nano- and Microscale Particles

Donato Conteduca, Francesco Dell’Olio, Thomas F. Krauss, and Caterina Ciminelli

The ability to manipulate and sense biological molecules is important in many life science domains, such as single-molecule biophysics, the development of new drugs and cancer detection. Although the manipulation of biological matter at the nanoscale continues to be a challenge, several types of nanotweezers based on different technologies have recently been demonstrated to address this challenge. In particular, photonic and plasmonic nanotweezers are attracting a strong research effort especially because they are efficient and stable, they offer fast response time, and avoid any direct physical contact with the target object to be trapped, thus preventing its disruption or damage. In this paper, we critically review photonic and plasmonic resonant technologies for biomolecule trapping, manipulation, and sensing at the nanoscale, with a special emphasis on hybrid photonic/plasmonic nanodevices allowing a very strong light–matter interaction. The state-of-the-art of competing technologies, e.g., electronic, magnetic, acoustic and carbon nanotube-based nanotweezers, and a description of their applications are also included.


Dynamics of an optically bound structure made of particles of unequal sizes

Vítězslav Karásek, Martin Šiler, Oto Brzobohatý, and Pavel Zemánek

This theoretical study based on the coupled dipoles model focuses on the dynamics of two optically bound dielectric spheres of unequal sizes confined in counter-propagating incoherent Bessel beams. We analyzed the relative motion of the particles with respect to each other and defined conditions where they form a stable optically bound structure (OBS). We also investigated the motion of the center of mass of the OBS and found that its direction depends on the particle separation in the structure. Besides the optical interaction between objects, we also considered a hydrodynamic coupling in order to obtain more precise results for moving an OBS.


Computational inverse design of non-intuitive illumination patterns to maximize optical force or torque

Yoonkyung E. Lee, Owen D. Miller, M. T. Homer Reid, Steven G. Johnson, and Nicholas X. Fang

This paper aims to maximize optical force or torque on arbitrary micro- and nanoscale objects using numerically optimized structured illumination. By developing a numerical framework for computer-automated design of 3d vector-field illumination, we demonstrate a 20-fold enhancement in optical torque per intensity over circularly polarized plane wave on a model plasmonic particle. The nonconvex optimization is efficiently performed by combining a compact cylindrical Bessel basis representation with a fast boundary element method and a standard derivative-free, local optimization algorithm. We analyze the optimization results for 2000 random initial configurations, discuss the tradeoff between robustness and enhancement, and compare the different effects of multipolar plasmon resonances on enhancing force or torque. All results are obtained using open-source computational software available online.


Characterization of single airborne particle extinction using the tunable optical trap-cavity ringdown spectroscopy (OT-CRDS) in the UV

Zhiyong Gong, Yong-Le Pan, and Chuji Wang

We integrated a rigid optical trap into a tunable pulsed cavity ringdown spectroscopy (OT-CRDS) system to characterize the extinction of single airborne particles in the UV spectral region (306-315 nm). Single solid particles from a multi-walled carbon nanotube (MWCNT), Bermuda grass smut spore, carbon microsphere, and blackened polyethylene microsphere were trapped in air based on the photophoretic force. The improved OT-CRDS system was highly sensitive and able to resolve extinctions of single particles from different materials and sizes at a given wavelength. Further, we successfully manipulated the number of particles, e.g., 1, 2 or more particles, in the trap and measured their distinguishable extinctions using the OT-CRDS. We also show that the particle size and extinction have a good linear correlation from the measurements of 24 single MWCNT particles. Material- and wavelength-dependent extinctions of the four types of airborne particles were also characterized. Results reveal that single airborne particles regardless of their differences in material and size, due to their heterogeneous morphology, have individual-particle dependent extinctions and that dependence can be resolved and characterized using the OT-CRDS technique.


Thermometry of levitated nanoparticles in a hybrid electro-optical trap

E B Aranas, P Z G Fonseca, P F Barker and T S Monteiro

There have been recent rapid developments in stable trapping of levitated nanoparticles in high vacuum. Cooling of nanoparticles, from phonon occupancies of 107 down to $\simeq \,100\mbox{--}1000$ phonons, have already been achieved by several groups. Prospects for quantum ground-state cooling seem extremely promising. Cavity-cooling without added stabilisation by feedback cooling remains challenging, but trapping at high vacuum in a cavity is now possible through the addition of a Paul trap. However, the Paul trap has been found to qualitatively modify the cavity output spectrum, with the latter acquiring an atypical 'split-sideband' structure, of different form from the displacement spectrum, and which depends on N, the optical well at which the particle localises. In the present work we investigate the N-dependence of the dynamics, in particular with respect to thermometry: we show that in strong cooling regions $N\gtrsim 100$, the temperature may still be reliably inferred from the cavity output spectra. We also explain the N-dependence of the mechanical frequencies and optomechanical coupling showing that these may be accurately estimated. We present a simple 'fast-cavity' model for the cavity output and test all our findings against full numerical solutions of the nonlinear stochastic equations of motion for the system.


Tuesday, April 18, 2017

Laser-assisted biofabrication in tissue engineering and regenerative medicine

Sangmo Koo, Samantha M. Santoni, Bruce Z. Gao, Costas P. Grigoropoulos and Zhen Ma

Controlling the spatial arrangement of biomaterials and living cells provides the foundation for fabricating complex biological systems. Such level of spatial resolution (less than 10 µm) is difficult to be obtained through conventional cell processing techniques, which lack the precision, reproducibility, automation, and speed required for the rapid fabrication of engineered tissue constructs. Recently, laser-assisted biofabrication techniques are being intensively developed with the use of computer-aided processes for patterning and assembling both living and nonliving materials with prescribed 2D or 3D organization. In this review, we discuss laser-assisted fabrication methods, including laser tweezers, multi-photon polymerization, laser-induced forward transfer (LIFT), matrix assisted pulsed laser evaporation (MAPLE), and laser ablation as well as their applications in biological science and biomedical engineering. These advanced technologies enable the precise manipulation of in vitro cellular microenvironments and the ability to engineer functional tissue constructs with high complexity and heterogeneity, which serve in regenerative medicine, pharmacology, and basic cell biology studies.


Optical Manipulation of Dielectric Nanoparticles with Au Micro-racetrack Resonator by Constructive Interference of Surface Plasmon Waves

Mingrui Yuan, Lin Cheng, Pengfei Cao, Xu Li, Xiaodong He, Xiaoping Zhang

We design a gold micro-racetrack resonator (Au-MRR) which can tightly trap and drive the dielectric nanoparticle to rotate around the circuit of racetrack with an adjustable velocity. Since the surface plasmon waves can be excited and obey the resonance condition of the Au-MRR, the optics force can be strengthened observably due to the resonance. The optical forces applied on dielectric nanoparticle are discussed by utilizing the Maxwell’s stress tensor integration with a numerical finite element method. The depth of longitudinal trapping potential well in the Au-MRR is four times as large as that of a straight waveguide. At the same level of input power, the velocity of particle with radius of 50 nm driven by optical forces on Au-MRR is 200 times larger than that on a straight waveguide. Further, we explore the motion behavior of single nanoparticle lies on different position of Au-MRR, which can provide the details to trap and manipulate multiple nanoparticles and predict their trace of movement. This optimum geometry of Au-MRR allows further enhancement of the optical forces which is expected to realize all-optical on-chip manipulation of nanoparticles, biomolecules, and many other nanomanipulation applications.


Omnidirectional Transport in Fully Reconfigurable Two Dimensional Optical Ratchets

Alejandro V. Arzola, Mario Villasante-Barahona, Karen Volke-Sepúlveda, Petr Jákl, and Pavel Zemánek

A fully reconfigurable two-dimensional (2D) rocking ratchet system created with holographic optical micromanipulation is presented. We can generate optical potentials with the geometry of any Bravais lattice in 2D and introduce a spatial asymmetry with arbitrary orientation. Nontrivial directed transport of Brownian particles along different directions is demonstrated numerically and experimentally, including on axis, perpendicular, and oblique with respect to an unbiased ac driving. The most important aspect to define the current direction is shown to be the asymmetry and not the driving orientation, and yet we show a system in which the asymmetry orientation of each potential well does not coincide with the transport direction, suggesting an additional symmetry breaking as a result of a coupling with the lattice configuration. Our experimental device, due to its versatility, opens up a new range of possibilities in the study of nonequilibrium dynamics at the microscopic level.


Monday, April 17, 2017

Effect of lipopolysaccharide O-side chains on the adhesiveness of Yersinia pseudotuberculosis to J774 macrophages as revealed by optical tweezers

A. A. Byvalov, V. L. KononenkoI. V. Konyshev

A method has been developed for the quantitative estimation of the binding force of a model microsphere with a eukaryocyte based on the optical trap in order to study the molecular mechanism of adhesion between an individual bacterium and a host cell. The substantial role of LPS O-side chains in the adhesiveness of Yersinia pseudotuberculosis 1b to J774 macrophages has been revealed with the use of a set of microspheres functionalized with lipopolysaccharide (LPS) preparations and antibodies with different specificities. The results indicate the significance of the O-antigen as a pathogenicity factor of Y. pseudotuberculosis in colonization of a macroorganism. The developed methodical approaches can be applied to the study of molecular mechanisms of the pathogenesis of pseudotuberculosis and other infectious diseases to improve antiepidemic service.


Laser-mediated rupture of chlamydial inclusions triggers pathogen egress and host cell necrosis

Markus C. Kerr, Guillermo A. Gomez, Charles Ferguson, Maria C. Tanzer, James M. Murphy, Alpha S. Yap, Robert G. Parton, Wilhelmina M. Huston & Rohan D Teasdale

Remarkably little is known about how intracellular pathogens exit the host cell in order to infect new hosts. Pathogenic chlamydiae egress by first rupturing their replicative niche (the inclusion) before rapidly lysing the host cell. Here we apply a laser ablation strategy to specifically disrupt the chlamydial inclusion, thereby uncoupling inclusion rupture from the subsequent cell lysis and allowing us to dissect the molecular events involved in each step. Pharmacological inhibition of host cell calpains inhibits inclusion rupture, but not subsequent cell lysis. Further, we demonstrate that inclusion rupture triggers a rapid necrotic cell death pathway independent of BAK, BAX, RIP1 and caspases. Both processes work sequentially to efficiently liberate the pathogen from the host cytoplasm, promoting secondary infection. These results reconcile the pathogen's known capacity to promote host cell survival and induce cell death.


Real-time monitoring and visualization of the multi-dimensional motion of an anisotropic nanoparticle

Gi-Hyun Go, Seungjin Heo, Jong-Hoi Cho, Yang-Seok Yoo, MinKwan Kim, Chung-Hyun Park & Yong-Hoon Cho

As interest in anisotropic particles has increased in various research fields, methods of tracking such particles have become increasingly desirable. Here, we present a new and intuitive method to monitor the Brownian motion of a nanowire, which can construct and visualize multi-dimensional motion of a nanowire confined in an optical trap, using a dual particle tracking system. We measured the isolated angular fluctuations and translational motion of the nanowire in the optical trap, and determined its physical properties, such as stiffness and torque constants, depending on laser power and polarization direction. This has wide implications in nanoscience and nanotechnology with levitated anisotropic nanoparticles.


Mechanistic Basis for the Binding of RGD- and AGDV-Peptides to the Platelet Integrin αIIbβ3

Olga Kononova, Rustem I. Litvinov, Dmitry S. Blokhin, Vladimir V. Klochkov, John W. Weisel, Joel S. Bennett, and Valeri Barsegov

Binding of soluble fibrinogen to the activated conformation of the integrin αIIbβ3 is required for platelet aggregation and is mediated exclusively by the C-terminal AGDV-containing dodecapeptide (γC-12) sequence of the fibrinogen γ chain. However, peptides containing the Arg-Gly-Asp (RGD) sequences located in two places in the fibrinogen Aα chain inhibit soluble fibrinogen binding to αIIbβ3 and make substantial contributions to αIIbβ3 binding when fibrinogen is immobilized and when it is converted to fibrin. Here, we employed optical trap-based nanomechanical measurements and computational molecular modeling to determine the kinetics, energetics, and structural details of cyclic RGDFK (cRGDFK) and γC-12 binding to αIIbβ3. Docking analysis revealed that NMR-determined solution structures of cRGDFK and γC-12 bind to both the open and closed αIIbβ3 conformers at the interface between the αIIb β-propeller domain and the β3 βI domain. The nanomechanical measurements revealed that cRGDFK binds to αIIbβ3 at least as tightly as γC-12. A subsequent analysis of molecular force profiles and the number of peptide−αIIbβ3 binding contacts revealed that both peptides form stable bimolecular complexes with αIIbβ3 that dissociate in the 60–120 pN range. The Gibbs free energy profiles of the αIIbβ3–peptide complexes revealed that the overall stability of the αIIbβ3-cRGDFK complex was comparable with that of the αIIbβ3−γC-12 complex. Thus, these results provide a mechanistic explanation for previous observations that RGD- and AGDV-containing peptides are both potent inhibitors of the αIIbβ3–fibrinogen interactions and are consistent with the observation that RGD motifs, in addition to AGDV, support interaction of αIIbβ3 with immobilized fibrinogen and fibrin.


Two-laser optical tweezers with a blinking beam

Weronika Lamperska, Jan Masajada, Sławomir Drobczyński, Paweł Gusin

We report on a two-laser holographic optical tweezers setup and present its two major advantages over single-laser one. First, the trap stiffness of a weak trapping beam can be measured with a considerable accuracy. Second, a novel method of examining local viscosity of fluid is proposed. Both measurements are performed based on forcing the oscillations of a microscopic polystyrene bead placed between two optical traps. The two beams are generated by separate laser sources and therefore their trapping power can vary. Moreover, a stronger trap ‘blinks’, modulated by an electronic shutter. The blinking frequency can be precisely adjusted to the experimental conditions, which results in high accuracy of the measurements.


Onset of particle trapping and release via acoustic bubbles

Yun Chen, Zecong Fang, Brett Merritt, Dillon Strack, Jie Xu and Sungyon Lee

Trapping and sorting of micro-sized objects is one important application of lab on a chip devices, with the use of acoustic bubbles emerging as an effective, non-contact method. Acoustically actuated bubbles are known to exert a secondary radiation force (FSR) on micro-particles and stabilize them on the bubble surface, when this radiation force exceeds the external hydrodynamic forces that act to keep the particles in motion. While the theoretical expression of FSR has been derived by Nyborg decades ago, no direct experimental validation of this force has been performed, and the relationship between FSR and the bubble's ability to trap particles in a given lab on a chip device remains largely empirical. In order to quantify the connection between the bubble oscillation and the resultant FSR, we experimentally measure the amplitude of bubble oscillations that give rise to FSR and observe the trapping and release of a single microsphere in the presence of the mean flow at the corresponding acoustic parameters using an acoustofluidic device. By combining well-developed theories that connect bubble oscillations to the acoustic actuation, we derive the expression for the critical input voltage that leads to particle release into the flow, in good agreement with the experiments.


Thursday, March 30, 2017

Equilibrium binding energies from fluctuation theorems and force spectroscopy simulations

Emma Hodges, B. M. Cooke, E. M. Sevick, Debra J. Searles, B. Dünweg and J. Ravi Prakash
Brownian dynamics simulations are used to study the detachment of a particle from a substrate. Although the model is simple and generic, we attempt to map its energy, length and time scales onto a specific experimental system, namely a bead that is weakly bound to a cell and then removed by an optical tweezer. The external driving force arises from the combined optical tweezer and substrate potentials, and thermal fluctuations are taken into account by a Brownian force. The Jarzynski equality and Crooks fluctuation theorem are applied to obtain the equilibrium free energy difference between the final and initial states. To this end, we sample non-equilibrium work trajectories for various tweezer pulling rates. We argue that this methodology should also be feasible experimentally for the envisioned system. Furthermore, we outline how the measurement of a whole free energy profile would allow the experimentalist to retrieve the unknown substrate potential by means of a suitable deconvolution. The influence of the pulling rate on the accuracy of the results is investigated, and umbrella sampling is used to obtain the equilibrium probability of particle escape for a variety of trap potentials.


Advanced aerosol optical tweezers chamber design to facilitate phase-separation and equilibration timescale experiments on complex droplets

Kyle Gorkowski, Hassan Beydoun, Mark Aboff, Jim S. Walker, Jonathan P. Reid & Ryan C. Sullivan

The phase-separation of mixed aerosol particles and the resulting morphology plays an important role in determining the interactions of liquid aerosols with their gas-phase environment. We present the application of a new aerosol optical tweezers chamber for delivering a uniformly mixed aerosol flow to the trapped droplet's position for performing experiments that determine the phase-separation and resulting properties of complex mixed droplets. This facilitates stable trapping when adding additional phases through aerosol coagulation, and reproducible measurements of the droplet's equilibration timescale. We demonstrate the trapping of pure organic carbon droplets, which allows us to study the morphology of droplets containing pure hydrocarbon phases to which a second phase is added by coagulation. A series of experiments using simple compounds are presented to establish our ability to use the cavity enhanced Raman spectra to distinguish between homogeneous single-phase, and phase-separated core–shell or partially engulfed morphologies. The core–shell morphology is distinguished by the pattern of the whispering gallery modes (WGMs) in the Raman spectra where the WGMs are influenced by refraction through both phases. A core–shell optimization algorithm was developed to provide a more accurate and detailed analysis of the WGMs than is possible using the homogeneous Mie scattering solution. The unique analytical capabilities of the aerosol optical tweezers provide a new approach for advancing our understanding of the chemical and physical evolution of complex atmospheric particulate matter, and the important environmental impacts of aerosols on atmospheric chemistry, air quality, human health, and climate change.


Mechanically Defined Microgels by Droplet Microfluidics

Thomas Heida, Jens W. Neubauer, Maximilian Seuss, Nicolas Hauck, Julian Thiele, Andreas Fery

Over the last two decades, droplet-based microfluidics has evolved into a versatile tool for fabricating tailored micrometer-sized hydrogel particles. Combining precise fluid handling down to femtoliter scale with diverse hydrogel precursor design, it allows for excellent control over microgel size and shape, but also functionalization and crosslinking density. Consequently, it is possible to tune physicochemical and mechanical properties such as swelling, degradation, stimuli sensitivity, and elasticity by microfluidic droplet templates. This has led to a recent trend in applying microgels as experimental platform in cell culturing, drug delivery, sensing, and tissue engineering. This article highlights advances in microfluidic droplet formation as templates for microgels with tailored physicochemical properties. Special focus is put on evolving design strategies for the synthesis of mechanically defined microgels, their applications, and methods for mechanical characterization on single-particle level.

Light-neuron interactions: key to understanding the brain

Mary Ann Go and Vincent R Daria

In recent years, advances in light-based technology have driven an ongoing optical revolution in neuroscience. Synergistic technologies in laser microscopy, molecular biology, organic and synthetic chemistry, genetic engineering and materials science have allowed light to overcome the limitations of and to replace many conventional tools used by physiologists to record from and to manipulate single cells or whole cellular networks. Here we review the different optical techniques for stimulating neurons, influencing neuronal growth, manipulating neuronal structures and neurosurgery.


Is it possible to create a perfect fractional vortex beam?

Georgiy Tkachenko, Mingzhou Chen, Kishan Dholakia, and Michael Mazilu

Laguerre–Gaussian beams of integer azimuthal index satisfy the fundamental principle of quantization of orbital angular momentum. Here, we consider light-induced orbiting of a trapped microparticle as a probe of the local orbital angular momentum density in both integer- and fractional-index perfect vortex beams. Simulations suggest that the distribution and the corresponding light-induced motion of the particle may be uniform in beams with integer azimuthal index, but fundamentally this cannot be achieved in beams with fractional index. We experimentally verify these predictions by light-induced trapping and rotation of individual microparticles in fractional index beams where we distribute the phase dislocations around the annular profile.


Wednesday, March 29, 2017

Optothermally driven colloidal transport in a confined nematic liquid crystal

M. Škarabot, N. Osterman and I. Muševič

We demonstrate transport of microparticles by rapid movement of a laser spot in a thin layer of a nematic liquid crystal. The transport is achieved by fluid flow, caused by two different mechanisms. The thermoviscous expansion effect induces colloidal transport in the direction opposite to the laser movement, whereas thermally induced local melting of the liquid crystal pulls the particles in the direction of the laser movement. We demonstrate control of colloidal transport by changing the speed of the laser trap movement and the laser power. We anticipate that complex optofluidic colloidal transport could be realized in the nematic liquid crystal using a channel-free optofluidic approach.


Cholesterol depletion impairs contractile machinery in neonatal rat cardiomyocytes

Barbara Hissa, Patrick W. Oakes, Bruno Pontes, Guillermina Ramírez-San Juan & Margaret L. Gardel

Cholesterol regulates numerous cellular processes. Depleting its synthesis in skeletal myofibers induces vacuolization and contraction impairment. However, little is known about how cholesterol reduction affects cardiomyocyte behavior. Here, we deplete cholesterol by incubating neonatal cardiomyocytes with methyl-beta-cyclodextrin. Traction force microscopy shows that lowering cholesterol increases the rate of cell contraction and generates defects in cell relaxation. Cholesterol depletion also increases membrane tension, Ca2+ spikes frequency and intracellular Ca2+ concentration. These changes can be correlated with modifications in caveolin-3 and L-Type Ca2+ channel distributions across the sarcolemma. Channel regulation is also compromised since cAMP-dependent PKA activity is enhanced, increasing the probability of L-Type Ca2+ channel opening events. Immunofluorescence reveals that cholesterol depletion abrogates sarcomeric organization, changing spacing and alignment of α-actinin bands due to increase in proteolytic activity of calpain. We propose a mechanism in which cholesterol depletion triggers a signaling cascade, culminating with contraction impairment and myofibril disruption in cardiomyocytes.


Two-beam laser fabrication technique and the application for fabricating conductive silver nanowire on flexible substrate

Gui-Cang He, Mei-Ling Zheng, Xian-Zi Dong, Jie Liu, Xuan-Ming Duan, and Zhen-Sheng Zhao

In this study, a two-beam laser fabrication technique is proposed to fabricate silver nanowire (AgNW) on the polyethylene terephthalate (PET) substrate. The femtosecond pulse laser in the technique plays a role in generating Ag nanoparticles from the silver aqueous solution by multiphoton photoreduction. The continuous wave (CW) laser of the technique works as optical tweezers, and make the Ag nanoparticles gather to a continuous AgNW by the optical trapping force. The optical trapping force of the CW laser was calculated under our experimental condition. The flexibility and the resistance stability of the AgNW that fabricated by this technique are very excellent. Compared to the resistance of the AgNW without bending, the decreasing rate of the AgNW resistance is about 16% under compressed bending condition at the radius of 1 mm, and the increasing rate of the AgNW resistance is only 1.3% after the AgNW bended about 3500 times at the bending radius of 1 mm. The study indicates that the AgNW is promising for achieving flexible device and would promote the development of the flexible electronics.


Direct Observation of Folding Energy Landscape of RNA Hairpin at Mechanical Loading Rates

Huizhong Xu, Benjamin Plaut, Xiran Zhu, Maverick Chen, Udit Mavinkurve, Anindita Maiti, Guangtao Song, Krishna Murari, and Maumita Mandal

By applying a controlled mechanical load using optical tweezers, we measured the diffusive barrier crossing in a 49 nt long P5ab RNA hairpin. We find that in the free-energy landscape the barrier height (G‡) and transition distance (x‡) are dependent on the loading rate (r) along the pulling direction, x, as predicted by Bell. The barrier shifted toward the initial state, whereas ΔG‡ reduced significantly from 50 to 5 kT, as r increased from 0 to 32 pN/s. However, the equilibrium work (ΔG) during strand separation, as estimated by Crook’s fluctuation theorem, remained unchanged at different rates. Previously, helix formation and denaturation have been described as two-state (F ↔ U) transitions for P5ab. Herein, we report three intermediate states I1, I, and I2 located at 4, 11, and 16 nm respectively, from the folded conformation. The intermediates were observed only when the hairpin was subjected to an optimal r, 7.6 pN/s. The results indicate that the complementary strands in P5ab can zip and unzip through complex routes, whereby mismatches act as checkpoints and often impose barriers. The study highlights the significance of loading rates in force-spectroscopy experiments that are increasingly being used to measure the folding properties of biomolecules.


Orbital rotation of biological cells using two fibre probes

J Huang, X Liu, Y Zhang and B Li

We report the orbital rotation of biological cells using two tapered fibre probes. We launched laser beams into the probes at a wavelength of 980 nm and rotated 5 µm-diameter yeast cells and 13.5 µm-diameter human leukemic K562 by optical force. The rotation period varied from 1.59 to 2.41 s for the yeast cells and was 4.83 s for the human leukemic K562. The rotation direction of the cells can be controlled by adjusting the position of the two probes. The experimental results were interpreted by theoretical analysis and numerical simulations.


Wednesday, March 22, 2017

Combining FRET and optical tweezers to study RhoGTPases spatio-temporal dynamics upon local stimulation

Federico Iseppon, Luisa MR Napolitano, Vincent Torre, Dan Cojoc

Local stimulation with optical tweezers has been used to mimic natural stimuli that occur in biological processes such as cell migration or differentiation. Carriers (beads and lipid vesicles) with sizes down to 30 nm can be manipulated with a high spatial and temporal resolution: they are positioned with a sub-micrometric precision on a specific cell compartment and the beginning of the stimulation can be triggered with millisecond precision. RhoGTPases are a Ras-related family of proteins that regulate many different functions including cell polarity, microtubule dynamics and membrane transport pathways. Here we combine local stimulation with FRET microscopy to study RhoGTPases spatial and temporal activation following guidance cue local stimulation. We used two different vectors for local delivery: silica micro-beads and micro-sized lipid vesicles. The experimental methods associated with neuronal growth cone local stimulation are discussed in detail, as well as the analysis methods. Here we present a protocol that enables to study neuronal growth cone cytoskeleton rearrangements in response to a gradient of molecules in a way that better mimics physiological conditions, and it can be similarly applied to each secreted molecule involved in cell signaling.


Laser-accelerated self-assembly of colloidal particles at the water–air interface

Mincheng Zhong, Ziqiang Wang, and Yinmei Li

We experimentally demonstrate that optical tweezers can be used to accelerate the self-assembly of colloidal particles at a water–air interface in this Letter. The thermal flow induced by optical tweezers dominates the growth acceleration at the interface. Furthermore, optical tweezers are used to create a local growth peak at the growing front, which is used to study the preferential incorporation positions of incoming particles. The results show that the particles surfed with a strong Marangoni flow tend to fill the gap and smoothen the steep peaks. When the peak is smooth, the incoming particles incorporate the crystal homogeneously at the growing front.


On the motion control of microparticles by means of an electromagnetic field increasing with time for spectroscopic applications

A. Ch. Izmailov

The possibility of controlling the motion of microparticles by means of external electromagnetic fields (nonresonance laser radiation, in particular) that induce potential wells for such particles, which are characterized by fixed spatial distribution but deepen over time to a certain level, are analyzed. It is assumed that the particles are located in high vacuum and are affected by nondissipative external forces. Slowing down of relatively fast particles when they pass through the discussed potential wells is shown. Such slowing down of particles is demonstrated using a nonresonance laser beam with intensity increasing over time as an example. Specific features of particle dynamics in the electromagnetic fields under consideration in the case of a one-dimensional rectangular potential well are studied in detail based on simple analytical relations derived from the fundamental equations of classical mechanics. The methods of particle cooling and localization demonstrated in the present work can substantially increase spectroscopy resolution of various microparticles, including, under certain conditions, atoms and molecules.


Single-molecule mechanochemical characterization of E. coli pol III core catalytic activity

M. Nabuan Naufer, David A. Murison, Ioulia Rouzina, Penny J. Beuning, Mark C. Williams

Pol III core is the three-subunit subassembly of the E. coli replicative DNA polymerase III holoenzyme. It contains the catalytic polymerase subunit α, the 3′ → 5′ proofreading exonuclease ε, and a subunit of unknown function, θ. We employ optical tweezers to characterize pol III core activity on a single DNA substrate. We observe polymerization at applied template forces F < 25 pN and exonucleolysis at F > 30 pN. Both polymerization and exonucleolysis occur as a series of short bursts separated by pauses. For polymerization, the initiation rate after pausing is independent of force. In contrast, the exonucleolysis initiation rate depends strongly on force. The measured force and concentration dependence of exonucleolysis initiation fits well to a two-step reaction scheme in which pol III core binds bimolecularly to the primer-template junction, then converts at rate k2 into an exo-competent conformation. Fits to the force dependence of kinit show that exo initiation requires fluctuational opening of two base pairs, in agreement with temperature- and mismatch-dependent bulk biochemical assays. Taken together, our results support a model in which the pol and exo activities of pol III core are effectively independent, and in which recognition of the 3′ end of the primer by either α or ε is governed by the primer stability. Thus, binding to an unstable primer is the primary mechanism for mismatch recognition during proofreading, rather than an alternative model of duplex defect recognition.


Optical methods for measuring DNA folding

Adam D. Smith, Obinna A. Ukogu, Luka M. Devenica, Elizabeth D. White, Ashley R. Carter

One of the most important biological processes is the dynamic folding and unfolding of deoxyribonucleic acid (DNA). The folding process is crucial for DNA to fit within the boundaries of the cell, while the unfolding process is essential for DNA replication and transcription. To accommodate both processes, the cell employs a highly active folding mechanism that has been the subject of intense study over the last few decades. Still, many open questions remain. What are the pathways for folding or unfolding? How does the folding equilibrium shift? And, what is the energy landscape for a particular process? Here, we review these emerging questions and the in vitro, optical methods that have provided answers, introducing the topic for those physicists seeking to step into biology. Specifically, we discuss two iconic experiments for DNA folding, the tethered particle motion (TPM) experiment and the optical tweezers experiment.

Tuesday, March 21, 2017

Manipulating particles with light: radiation and gradient forces

David S Bradshaw and David L Andrews
The manipulation of matter with electromagnetic radiation is a capacity that has been known for over a century. However, the prominence of such optical effects only grew rapidly following the invention of optical tweezers in the 1980s. While both the original theory and the early trapping techniques are based on the radiation force, optical tweezing uses the gradient force. This paper aims to differentiate between these two clearly distinct types of optical forces, which are sometimes confused in the literature. We also discuss three completely separate forms of optical torque that can be applied to a particle, also due to an electromagnetic field. These involve the transfer of either spin or orbital angular momentum from the beam to the particle, depending on the character of the light, or the often overlooked alignment effect that can act on a cylindrical particle due to a gradient force.


Visual guide to optical tweezers

Isaac C D Lenton, Alexander B Stilgoe, Halina Rubinsztein-Dunlop and Timo A Nieminen

It is common to introduce optical tweezers using either geometric optics for large particles or the Rayleigh approximation for very small particles. These approaches are successful at conveying the key ideas behind optical tweezers in their respective regimes. However, they are insufficient for modelling particles of intermediate size and large particles with small features. For this, a full field approach provides greater insight into the mechanisms involved in trapping. The advances in computational capability over the last decade have led to better modelling and understanding of optical tweezers. Problems that were previously difficult to model computationally can now be solved using a variety of methods on modern systems. These advances in computational power allow for full field solutions to be visualised, leading to increased understanding of the fields and behaviour in various scenarios. In this paper we describe the operation of optical tweezers using full field simulations calculated using the finite difference time domain method. We use these simulations to visually illustrate various situations relevant to optical tweezers, from the basic operation of optical tweezers, to engineered particles and evanescent fields.


Controllable generation and manipulation of micro-bubbles in water with absorptive colloid particles by CW laser radiation

O. V. Angelsky, A. Ya. Bekshaev, P. P. Maksimyak, A. P. Maksimyak, S. G. Hanson, and S. M. Kontush

Micrometer-sized vapor-gas bubbles are formed due to local heating of a water suspension containing absorptive pigment particles of 100 nm diameter. The heating is performed by CW near-infrared (980 nm) laser radiation with controllable power, focused into a 100 μm spot within a 2 mm suspension layer. By changing the laser power, four regimes are realized: (1) bubble generation; (2) stable growth of the existing bubbles; (3) stationary existence of the bubbles and (4) the bubbles’ shrinkage and collapse. This behavior is interpreted based on the temperature conditions. The generation and evolution of single bubbles and ensembles of bubbles with controllable sizes and numbers is demonstrated. The bubbles are grouped within the laser-illuminated region and form quasi-ordered structures. They can easily be moved and transported controlled by the focal spot. The results are useful for applications associated with the precise manipulation, sorting and specific delivery in nano- and micro-engineering problems.


Strong plasmonic confinement and optical force in phosphorene pairs

Hua Lu, Yongkang Gong, Dong Mao, Xuetao Gan, and Jianlin Zhao

The plasmonic responses in the spatially separated phosphorene (single-layer black phosphorus) pairs are investigated, mainly containing the field enhancement, light confinement, and optical force. It is found that the strong anisotropic dispersion of black phosphorus gives rise to the direction-dependent symmetric and anti-symmetric plasmonic modes. Our results demonstrate that the symmetrical modes possess stronger field enhancement, higher light confinement, and larger optical force than the anti-symmetric modes in the nanoscale structures. Especially, the light confinement ratio and optical force for the symmetric mode along the armchair direction of black phosphorus can reach as high as >90% and >3000 pN/mW, respectively. These results may open a new door for the light manipulation at nanoscale and the design of black phosphorus based photonic devices.


Methods for Elucidation of DNA-Anticancer Drug Interactions and their Applications in the Development of New Drugs

Majus Misiak, Francesco Mantegazza, Giovanni L. Beretta

DNA damaging agents including anthracyclines, camptothecins and platinum drugs are among most frequently used drugs in the chemotherapeutic routine. Due to their relatively low selectivity for cancer cells, administration of these drugs is associated with adverse side effects, inherent genotoxicity with risk of developing secondary cancers. Development of new drugs, which could be spared of these drawbacks and characterize by improved antitumor efficacy, remains challenging yet vitally important task. These properties are in large part dictated by the selectivity of interaction between the drug and DNA and in this way the studies aimed at elucidating the complex interactions between ligand and DNA represent a key step in the drug development. Studies of the drug-DNA interactions encompass determination of DNA sequence specificity and mode of DNA binding as well as kinetic, dynamic and structural parameters of binding. Here, we consider the types of interactions between small molecule ligands and polynucleotides, how they are affected by DNA sequence and structure, and what is their significance for the antitumor activity. Based on this knowledge, we discuss the wide array of experimental techniques available to researchers for studying drug-DNA interactions, which include absorption and emission spectroscopies, NMR, magnetic and optical tweezers or atomic force microscopy. We show, using the clinical and experimental anticancer drugs as examples, how these methods provide various types of information and at the same time complement each other to provide full picture of drug- DNA interaction and aid in the development of new drugs.


Friday, March 17, 2017

On-chip laser processing for the development of multifunctional microfluidic chips

Huan Wang, Yong-Lai Zhang, Wei Wang, Hong Ding, Hong-Bo Sun

In the development of microfluidic chips, conventional 2D processing technologies contribute to the manufacturing of basic microchannel networks. Nevertheless, in the pursuit of versatile microfluidic chips, flexible integration of multifunctional components within a tiny chip is still challenging because a chip containing micro-channels is a non-flat substrate. Recently, on-chip laser processing (OCLP) technology has emerged as an appealing alternative to achieve chip functionalization through in situ fabrication of 3D microstructures. Here, the recent development of OCLP-enabled multifunctional microfluidic chips, including several accessible photochemical/photophysical schemes, and photosensitive materials permiting OCLP, is reviewed. To demonstrate the capability of OCLP technology, a series of typical micro-components fabricated using OCLP are introduced. The prospects and current challenges of this field are discussed.


Integrating Optical Tweezers with Up-converting Luminescence: A Non-amplification Analytical Platform for Quantitative Detection of MicroRNA-21 Sequences

Cheng-Yu Li, Di Cao, Chong-Yang Song, Chun-Miao Xu, Yu-Yan Ma, Zhi-Ling Zhang, Dai-Wen Pang and Hongwu Tang

Sensitive non-amplification detection of biomolecules is a major concern in analytical science. Here, we report a single-microsphere based imaging assay method by integrating up-converting luminescence with optical tweezers (OT) for detecting microRNAs. By taking advantages of the anti-Stokes luminescence and a minimal three-dimensional excitation region formed by OT, there exist a very low background signal around a trapped sandwich structure complex microsphere enriched with targets (miRNA-21). This effect is further enhanced by combining it with a sensitive imaging detector (EMCCD) and thus achieves a competitive detection limit of 12 fM with quite sound selectivity and no complicated signal amplification designs. As a proof-of-concept study, this analytical methodology can also be employed to quantify the amount of miRNA-21 sequences from as low as 100 cancer cells, making it a promising new means for biomedical applications.


Integrated Optofluidic Chip for Low-Volume Fluid Viscosity Measurement

Tie Yang, Giovanni Nava, Valerio Vitali, Francesca Bragheri, Roberto Osellame, Tommaso Bellini, Ilaria Cristiani and Paolo Minzioni

In the present work, an integrated optofluidic chip for fluid viscosity measurements in the range from 1 mPa·s to 100 mPa·s is proposed. The device allows the use of small sample volumes (<1 µL) and the measurement of viscosity as a function of temperature. Thanks to the precise control of the force exerted on dielectric spheres by optical beams, the viscosity of fluids is assessed by comparing the experimentally observed movement of dielectric beads produced by the optical forces with that expected by numerical calculations. The chip and the developed technique are validated by analyzing several fluids, such as Milli-Q water, ethanol and water–glycerol mixtures. The results show a good agreement between the experimental values and those reported in the literature. The extremely reduced volume of the sample required and the high flexibility of this technique make it a good candidate for measuring a wide range of viscosity values as well as for the analysis of nonlinear viscosity in complex fluids.


Vitamin E nanoemulsion activity on stored red blood cells

C. A. L. Silva, C. A. Azevedo Filho, G. Pereira, D. C. N. Silva, M. C. A. B. Castro, A. F. Almeida, S. C. A. Lucena, B. S. Santos, M. L. Barjas-Castro, A. Fontes

Stored red blood cells (RBCs) undergo numerous changes that have been termed RBC storage lesion, which can be related to oxidative damage. Vitamin E is an important antioxidant, acting on cell lipids. Thus, this study aimed to investigate vitamin E activity on stored RBCs.
We prepared a vitamin E nanoemulsion that was added to RBC units and stored at 4 °C. Controls, without vitamin E, were kept under the same conditions. Reactive oxygen species (ROS) production was monitored for up to 35 days of storage. RBC elasticity was also evaluated using an optical tweezer system.
Vitamin E-treated samples presented a significant decrease in ROS production. Additionally, the elastic constant for vitamin E-treated RBCs did not differ from the control.
Vitamin E decreased the amount of ROS in stored RBCs. Because vitamin E acts on lipid oxidation, results suggest that protein oxidation should also be considered a key factor for erythrocyte elastic properties. Thus, further studies combining vitamin E with protein antioxidants deserve attention, aiming to better preserve overall stored RBC properties.


Thermophoretic Tweezers for Low-Power and Versatile Manipulation of Biological Cells

Linhan Lin, Xiaolei Peng, Xiaoling Wei, Zhangming Mao, Chong Xie, and Yuebing Zheng

Optical manipulation of biological cells and nanoparticles is significantly important in life sciences, early disease diagnosis, and nanomanufacturing. However, low-power and versatile all-optical manipulation has remained elusive. Herein, we have achieved light-directed versatile thermophoretic manipulation of biological cells at an optical power 100–1000 times lower than that of optical tweezers. By harnessing the permittivity gradient in the electric double layer of the charged surface of the cell membrane, we succeed at the low-power trapping of suspended biological cells within a light-controlled temperature gradient field. Furthermore, through dynamic control of optothermal potentials using a digital micromirror device, we have achieved arbitrary spatial arrangements of cells at a resolution of ∼100 nm and precise rotation of both single and assemblies of cells. Our thermophoretic tweezers will find applications in cellular biology, nanomedicine, and tissue engineering.


Thursday, March 16, 2017

Aberration compensation for optical trapping of cells within living mice

Min-Cheng Zhong, Zi-Qiang Wang, and Yin-Mei Li

Optical tweezers have been used to trap and manipulate microparticles within living animals. When the optical trap is constructed with an oil-immersion objective, it suffers from spherical aberration. There have been many investigations on the influence of spherical aberration when the particles are trapped in a water medium. However, the dependence of optical force on trapping depth is still ambiguous when the trapped particles are immersed in a high refractive index medium (such as biological tissue, refractive index solution) in experiments. In this paper, the microparticles are immersed in an aqueous solution of glycerol to mimic the cells within biological tissue. As the trapping laser is focused into the specimen, spherical aberration is introduced, degrading the optical trapping performance. It is similar to trapping in water; altering the effective tube length can also compensate for the spherical aberration of the optical trap in a high refractive index medium. Finally, the cells in living mice are trapped by the optical tweezers with the help of spherical aberration compensation.


Optical tweezers studies of transcription by eukaryotic RNA polymerases

Ana Lisica, Stephan W. Grill

Transcription is the first step in the expression of genetic information and it is carried out by large macromolecular enzymes called RNA polymerases. Transcription has been studied for many years and with a myriad of experimental techniques, ranging from bulk studies to high-resolution transcript sequencing. In this review, we emphasise the advantages of using single-molecule techniques, particularly optical tweezers, to study transcription dynamics. We give an overview of the latest results in the single-molecule transcription field, focusing on transcription by eukaryotic RNA polymerases. Finally, we evaluate recent quantitative models that describe the biophysics of RNA polymerase translocation and backtracking dynamics.


Plasmonic Particles with Unique Optical Interaction and Mechanical Motion Properties

Jiafang Li, Jing Liu, Ximin Tian, Zhi-Yuan Li

Metal nanoparticles have unique localized surface plasmon resonance (SPR) properties due to the strong interaction of localized surface plasmon polariton (SPP) with incident light. This review will cover some of our recent theoretical and experimental studies on exploring the unique optical interaction and mechanical motion properties of plasmonic particles that originate from SPR enhanced light-matter interaction. Firstly, the efficient enhancement of both the fluorescence excitation and emission process of dye molecules by the double SPR modes (longitudinal and transverse modes) in gold nanorods, and surface plasmon amplification in metal nanoparticles with gain is discussed. Secondly, it is theoretically demonstrated that two basic physical processes of molecules interacting with light, i.e., the elastic Rayleigh scattering and inelastic Raman scattering, will strongly intertwine and correlate with each other in many plasmonic surface-enhanced Raman scattering (SERS) and tip-enhanced Raman scattering (TERS) nanosystems. Thirdly, it is experimentally shown that SPR can enhance the optical force and torque of nanoparticles embedded within non-intrusive optical tweezers. The work presented in this review shows that plasmonic particles can possess unique optical interaction and mechanical motion properties when their geometries are deliberately controlled.


Hidden topological constellations and polyvalent charges in chiral nematic droplets

Gregor Posnjak, Simon Čopar & Igor Muševič

Topology has an increasingly important role in the physics of condensed matter, quantum systems, material science, photonics and biology, with spectacular realizations of topological concepts in liquid crystals. Here we report on long-lived hidden topological states in thermally quenched, chiral nematic droplets, formed from string-like, triangular and polyhedral constellations of monovalent and polyvalent singular point defects. These topological defects are regularly packed into a spherical liquid volume and stabilized by the elastic energy barrier due to the helical structure and confinement of the liquid crystal in the micro-sphere. We observe, for the first time, topological three-dimensional point defects of the quantized hedgehog charge q=−2, −3. These higher-charge defects act as ideal polyvalent artificial atoms, binding the defects into polyhedral constellations representing topological molecules.


Extending calibration-free force measurements to optically-trapped rod-shaped samples

Frederic Català, Ferran Marsà, Mario Montes-Usategui, Arnau Farré & Estela Martín-Badosa

Optical trapping has become an optimal choice for biological research at the microscale due to its non-invasive performance and accessibility for quantitative studies, especially on the forces involved in biological processes. However, reliable force measurements depend on the calibration of the optical traps, which is different for each experiment and hence requires high control of the local variables, especially of the trapped object geometry. Many biological samples have an elongated, rod-like shape, such as chromosomes, intracellular organelles (e.g., peroxisomes), membrane tubules, certain microalgae, and a wide variety of bacteria and parasites. This type of samples often requires several optical traps to stabilize and orient them in the correct spatial direction, making it more difficult to determine the total force applied. Here, we manipulate glass microcylinders with holographic optical tweezers and show the accurate measurement of drag forces by calibration-free direct detection of beam momentum. The agreement between our results and slender-body hydrodynamic theoretical calculations indicates potential for this force-sensing method in studying protracted, rod-shaped specimens.


Wednesday, March 15, 2017

Fiber-Based Optical Gun for Particle Shooting

Hongchang Deng, Yaxun Zhang, Tinging Yuan, Xiaotong Zhang, Yu Zhang, Zhihai Liu, and Libo Yuan

We proposed and fabricated a fiber-based optical gun for both particle trapping and shooting. The all-fiber device is made of a coaxial core optical fiber with a center core and a coaxial circular core. The fiber has a cone-frustum-shaped tip to enable the circular core to generate a focused ring light as a trapping beam, providing a stable 3D trapping potential well. When a small particle is trapped, a Gaussian beam is launched as a shooting light at the fiber center core to push the particle away from the fiber tip along the propagation direction of the beam. Here, we find that (1) the highly focused ring field with considerably lowered focusing intensity can generate a very stable particle-trapping potential well in three dimensions and the photothermal effect is also greatly reduced due to the lower optical power requirement for trapping and (2) the shooting light with a Gaussian profile not only supplies a radiation pushing force on the small particle, but also has restrictions and guiding effects as a gun barrel to propel the small particle out of the trapping well at a high speed along the beam propagation direction. The particle shooting distance can reach several hundreds of micrometers. Transverse deviation from the optical axis can be controlled within several micrometers under disturbances of ambient fluid flow. Our proposed method extends the potential applications of fiber-based optical manipulation, e.g., microparticle sorting in biology, accurate delivery of microparticles of a drug to the target cells, and observation of drug synergism.


Resonance optical trapping of individual dye-doped polystyrene particles with blue- and red-detuned lasers

Tetsuhiro Kudo, Hajime Ishihara, and Hiroshi Masuhara

We demonstrate resonance optical trapping of individual dye-doped polystyrene particles with blue- and red-detuned lasers whose energy are higher and lower compared to electronic transition of the dye molecules, respectively. Through the measurement on how long individual particles are trapped at the focus, we here show that immobilization time of dye-doped particles becomes longer than that of bare ones. We directly confirm that the immobilization time of dye-doped particles trapped by the blue-detuned laser becomes longer than that by the red-detuned one. These findings are well interpreted by our previous theoretical proposal based on nonlinear optical response under intense laser field. It is discussed that the present result is an important step toward efficient and selective manipulation of molecules, quantum dots, nanoparticles, and various nanomaterials based on their quantum mechanical properties.


Optical tug-of-war tweezers: shaping light for dynamic control of bacterial cells

Joshua Lamstein, Anna Bezryadina, Daryl Preece, Joseph C. Chen, and Zhigang Chen

We design and demonstrate new types of optical tweezers with lateral pulling forces that allow full control of biological samples with complex geometric shapes. With appropriate beam shaping, the dual tug-of-war tweezers effectively hold and stretch elongated biological objects of different sizes, and the triangular tug-of-war tweezers with threefold rotational symmetry steadily hold asymmetric objects in the plane of observation and exert stretching forces along three directions. We successfully apply these tweezers to manipulate microparticles and bacterial cells in aqueous media.


Interactions of mucins with the Tn or Sialyl Tn cancer antigens including MUC1 are due to GalNAc–GalNAc interactions

Kristin E Haugstad,  Soosan Hadjialirezaei,  Bjørn T Stokke,  C Fred Brewer, Thomas A Gerken,  Joy Burchell,  Gianfranco Picco,  Marit Sletmoen

The molecular mechanism(s) underlying the enhanced self-interactions of mucins possessing the Tn (GalNAcα1-Ser/Thr) or STn (NeuNAcα2-6GalNAcα1-Ser/Thr) cancer markers were investigated using optical tweezers (OT). The mucins examined included modified porcine submaxillary mucin containing the Tn epitope (Tn-PSM), ovine submaxillary mucin with the STn epitope (STn-OSM), and recombinant MUC1 analogs with either the Tn and STn epitope. OT experiments in which the mucins were immobilized onto polystyrene beads revealed identical self-interaction characteristics for all mucins. Identical binding strength and energy landscape characteristics were also observed for synthetic polymers displaying multiple GalNAc decorations. Polystyrene beads without immobilized mucins showed no self-interactions and also no interactions with mucin-decorated polystyrene beads. Taken together, the experimental data suggest that in these molecules, the GalNAc residue mediates interactions independent of the anchoring polymer backbone. Furthermore, GalNAc–GalNAc interactions appear to be responsible for self-interactions of mucins decorated with the STn epitope. Hence, Tn-MUC1 and STn-MUC1 undergo self-interactions mediated by the GalNAc residue in both epitopes, suggesting a possible molecular role in cancer. MUC1 possessing the T (Galβ1-3GalNAcα1-Ser/Thr) or ST antigen (NeuNAcα2-3Galβ1-3GalNAcα1-Ser/Thr) failed to show self-interactions. However, in the case of ST-MUC1, self-interactions were observed after subsequent treatment with neuraminidase and β-galactosidase. This enzymatic treatment is expected to introduce Tn-epitopes and these observations thus further strengthen the conclusion that the observed interactions are mediated by the GalNAc groups.


Effective computational modeling of erythrocyte electro-deformation

Nicola A. Nodargi, Paolo Bisegna, Federica Caselli

Due to its crucial role in pathophysiology, erythrocyte deformability represents a subject of intense experimental and modeling research. Here a computational approach to electro-deformation for erythrocyte mechanical characterization is presented. Strong points of the proposed strategy are: (1) an accurate computation of the mechanical actions induced on the cell by the electric field, (2) a microstructurally-based continuum model of the erythrocyte mechanical behavior, (3) an original rotation-free shell finite element, especially suited to the application in hand. As proved by the numerical results, the developed tool is effective and sound, and can foster the role of electro-deformation in single-cell mechanical phenotyping.


Friday, March 3, 2017

Focal adhesion kinase activity is required for actomyosin contractility-based invasion of cells into dense 3D matrices

Claudia T. Mierke, Tony Fischer, Stefanie Puder, Tom Kunschmann, Birga Soetje & Wolfgang H. Ziegler

The focal adhesion kinase (FAK) regulates the dynamics of integrin-based cell adhesions important for motility. FAK’s activity regulation is involved in stress-sensing and focal-adhesion turnover. The effect of FAK on 3D migration and cellular mechanics is unclear. We analyzed FAK knock-out mouse embryonic fibroblasts and cells expressing a kinase-dead FAK mutant, R454-FAK, in comparison to FAK wild-type cells. FAK knock-out and FAKR454/R454 cells invade dense 3D matrices less efficiently. These results are supported by FAK knock-down in wild-type fibroblasts and MDA-MB-231 human breast cancer cells showing reduced invasiveness. Pharmacological interventions indicate that in 3D matrices, cells deficient in FAK or kinase-activity behave similarly to wild-type cells treated with inhibitors of Src-activity or actomyosin-contractility. Using magnetic tweezers experiments, FAKR454/R454 cells are shown to be softer and exhibit impaired adhesion to fibronectin and collagen, which is consistent with their reduced 3D invasiveness. In line with this, FAKR454/R454 cells cannot contract the matrix in contrast to FAK wild-type cells. Finally, our findings demonstrate that active FAK facilitates 3D matrix invasion through increased cellular stiffness and transmission of actomyosin-dependent contractile force in dense 3D extracellular matrices.


Anaphase A: Disassembling Microtubules Move Chromosomes toward Spindle Poles

Charles L. Asbury

The separation of sister chromatids during anaphase is the culmination of mitosis and one of the most strikingly beautiful examples of cellular movement. It consists of two distinct processes: Anaphase A, the movement of chromosomes toward spindle poles via shortening of the connecting fibers, and anaphase B, separation of the two poles from one another via spindle elongation. I focus here on anaphase A chromosome-to-pole movement. The chapter begins by summarizing classical observations of chromosome movements, which support the current understanding of anaphase mechanisms. Live cell fluorescence microscopy studies showed that poleward chromosome movement is associated with disassembly of the kinetochore-attached microtubule fibers that link chromosomes to poles. Microtubule-marking techniques established that kinetochore-fiber disassembly often occurs through loss of tubulin subunits from the kinetochore-attached plus ends. In addition, kinetochore-fiber disassembly in many cells occurs partly through ‘flux’, where the microtubules flow continuously toward the poles and tubulin subunits are lost from minus ends. Molecular mechanistic models for how load-bearing attachments are maintained to disassembling microtubule ends, and how the forces are generated to drive these disassembly-coupled movements, are discussed.


Radiation forces on a Rayleigh dielectric sphere produced by highly focused parabolic scaling Bessel beams

Mengwen Guo and Daomu Zhao

The radiation forces on a Rayleigh dielectric particle induced by a highly focused parabolic scaling Bessel beam (PSBB) are investigated. Numerical results show that the zero-order PSBB can be used to trap a high-index particle at the focus and near the focus by the first-order PSBB. For the low-index particle, it can be guided or confined in the dark core of the nonzero-order PSBB but cannot be stably trapped in this single-beam trap. Further, we analyze the condition of trapping stability. It is found that the lower limit in the particle radius for stable trapping is different for different orders.


Direct measurement of cortical force generation and polarization in a living parasite

Rachel V. Stadler, Lauren A. White, Ke Hu, Brian P. Helmke, and William H. Guilford

Apicomplexa is a large phylum of intracellular parasites that are notable for the diseases they cause, including toxoplasmosis, malaria and cryptosporidiosis. A conserved motile system is critical to their lifecycles as it drives directional gliding motility between cells, as well as invasion of and egress from host cells. However, our understanding of this system is limited by a lack of measurements of the forces driving parasite motion. We used a laser trap to measure the function of the motility apparatus of living Toxoplasma gondii by adhering a microsphere to the surface of an immobilized parasite. Motion of the microsphere reflected underlying forces exerted by the motile apparatus. We found that force generated at the parasite surface begins with no preferential directionality, but becomes directed toward the rear of the cell after a period of time. The transition from non-directional to directional force generation occurs on spatial intervals consistent with the lateral periodicity of structures associated with the membrane pellicle, and is influenced by the kinetics of actin filament polymerization and cytoplasmic calcium. A lysine methyltransferase regulates both the magnitude and polarization of the force. Our work provides a novel means to dissect the motile mechanisms of these pathogens.


Directed rotational motion of birefringent particles by randomly changing the barrier height at the threshold in a washboard potential

Basudev Roy, Erik Schaffer

This communication presents a simulation study of the directed rotational motion of a birefringent spherical particle trapped in optical tweezers with randomly varying ellipticity of a trapping light at the point of threshold. When noise is not applied, the potential barrier due to the linear component of the polarization is simulated to be sufficient to prevent directed rotation till a certain threshold value of ellipticity. Random variations to the ellipticity cause random variations in the barrier height, including instants when the barrier is lower than the threshold energy level. It is due to this that the particle exhibits directed rotational motion at ellipticity lower than the threshold value. We also examine the rotational velocity of the birefringent particle as a function of the extent of zero-mean random noise applied to the ellipticity.


Thursday, March 2, 2017

Atomization efficiency and photon yield in laser-induced breakdown spectroscopy analysis of single nanoparticles in an optical trap

Pablo Purohit, Francisco J. Fortes, J. Javier Laserna

Laser-induced breakdown spectroscopy (LIBS) was employed for investigating the influence of particle size on the dissociation efficiency and the absolute production of photons per mass unit of airborne solid graphite spheres under single-particle regime. Particles of average diameter of 400 nm were probed and compared with 2 μm particles. Samples were first catapulted into aerosol form and then secluded in an optical trap set by a 532 nm laser. Trap stability was quantified before subjecting particles to LIBS analysis. Fine alignment of the different lines comprising the optical catapulting-optical trapping-laser-induced breakdown spectroscopy instrument and tuning of excitation parameters conditioning the LIBS signal such as fluence and acquisition delay are described in detail with the ultimate goal of acquiring clear spectroscopic data on masses as low as 75 fg. The atomization efficiency and the photon yield increase as the particle size becomes smaller. Time-resolved plasma imaging studies were conducted to elucidate the mechanisms leading to particle disintegration and excitation.


Rich stochastic dynamics of co-doped Er:Yb fluorescence upconversion nanoparticles in the presence of thermal, non-conservative, harmonic and optical forces

Rene A Nome, Cecilia Sorbello, Matías Jobbágy, Beatriz C Barja, Vitor Sanches, Joyce S Cruz and Vinicius F Aguiar

The stochastic dynamics of individual co-doped Er:Yb upconversion nanoparticles (UCNP) were investigated from experiments and simulations. The UCNP were characterized by high-resolution scanning electron microscopy, dynamic light scattering, and zeta potential measurements. Single UCNP measurements were performed by fluorescence upconversion micro-spectroscopy and optical trapping. The mean-square displacement (MSD) from single UCNP exhibited a time-dependent diffusion coefficient which was compared with Brownian dynamics simulations of a viscoelastic model of harmonically bound spheres. Experimental time-dependent two-dimensional trajectories of individual UCNP revealed correlated two-dimensional nanoparticle motion. The measurements were compared with stochastic trajectories calculated in the presence of a non-conservative rotational force field. Overall, the complex interplay of UCNP adhesion, thermal fluctuations and optical forces led to a rich stochastic behavior of these nanoparticles.


Hot-nanoparticle-mediated fusion of selected cells

Azra Bahadori, Lene B. Oddershede, Poul M. Bendix

Complete fusion of two selected cells allows for the creation of novel hybrid cells with inherited genetic properties from both original cells. Alternatively, via fusion of a selected cell with a selected vesicle, chemicals or genes can be directly delivered into the cell of interest, to control cellular reactions or gene expression. Here, we demonstrate how to perform an optically controlled fusion of two selected cells or of one cell and one vesicle. Fusion is mediated by laser irradiating plasmonic gold nanoparticles optically trapped between two cells (or a vesicle and a cell) of interest. This hot-particle-mediated fusion causes total mixing of the two cytoplasms and the two cell membranes resulting in formation of a new hybrid cell with an intact cell membrane and enzymatic activity following fusion. Similarly, fusion between a vesicle and a cell results in delivery of the vesicle cargo to the cytoplasm, and after fusion, the cell shows signs of viability. The method is an implementation of targeted drug delivery at the single-cell level and has a great potential for cellular control and design.


Stable optical trapping and sensitive characterization of nanostructures using standing-wave Raman tweezers

Mu-ying Wu, Dong-xiong Ling, Lin Ling, William Li & Yong-qing Li

Optical manipulation and label-free characterization of nanoscale structures open up new possibilities for assembly and control of nanodevices and biomolecules. Optical tweezers integrated with Raman spectroscopy allows analyzing a single trapped particle, but is generally less effective for individual nanoparticles. The main challenge is the weak gradient force on nanoparticles that is insufficient to overcome the destabilizing effect of scattering force and Brownian motion. Here, we present standing-wave Raman tweezers for stable trapping and sensitive characterization of single isolated nanostructures with a low laser power by combining a standing-wave optical trap with confocal Raman spectroscopy. This scheme has stronger intensity gradients and balanced scattering forces, and thus can be used to analyze many nanoparticles that cannot be measured with single-beam Raman tweezers, including individual single-walled carbon nanotubes (SWCNT), graphene flakes, biological particles, SERS-active metal nanoparticles, and high-refractive semiconductor nanoparticles. This would enable sorting and characterization of specific SWCNTs and other nanoparticles based on their increased Raman fingerprints.


Optical Trap Loading of Dielectric Microparticles In Air

Haesung Park, Thomas W. LeBrun

We demonstrate a method to trap a selected dielectric microparticle in air using radiation pressure from a single-beam gradient optical trap. Randomly scattered dielectric microparticles adhered to a glass substrate are momentarily detached using ultrasonic vibrations generated by a piezoelectric transducer (PZT). Then, the optical beam focused on a selected particle lifts it up to the optical trap while the vibrationally excited microparticles fall back to the substrate. A particle may be trapped at the nominal focus of the trapping beam or at a position above the focus (referred to here as the levitation position) where gravity provides the restoring force. After the measurement, the trapped particle can be placed at a desired position on the substrate in a controlled manner.
In this protocol, an experimental procedure for selective optical trap loading in air is outlined. First, the experimental setup is briefly introduced. Second, the design and fabrication of a PZT holder and a sample enclosure are illustrated in detail. The optical trap loading of a selected microparticle is then demonstrated with step-by-step instructions including sample preparation, launching into the trap, and use of electrostatic force to excite particle motion in the trap and measure charge. Finally, we present recorded particle trajectories of Brownian and ballistic motions of a trapped microparticle in air. These trajectories can be used to measure stiffness or to verify optical alignment through time domain and frequency domain analysis. Selective trap loading enables optical tweezers to track a particle and its changes over repeated trap loadings in a reversible manner, thereby enabling studies of particle-surface interaction.


Local Arp2/3-dependent actin assembly modulates applied traction force during apCAM adhesion site maturation

Kenneth B. Buck, Andrew W. Schaefer, Vincent T. Schoonderwoert, Matthew S. Creamer, Eric R. Dufresne, and Paul Forscher

Homophilic binding of immunoglobulin superfamily molecules such as the Aplysia cell adhesion molecule (apCAM) leads to actin filament assembly near nascent adhesion sites. Such actin assembly can generate significant localized forces that have not been characterized in the larger context of axon growth and guidance. We used apCAM-coated bead substrates applied to the surface of neuronal growth cones to characterize the development of forces evoked by varying stiffness of mechanical restraint. Unrestrained bead propulsion matched or exceeded rates of retrograde network flow and was dependent on Arp2/3 complex activity. Analysis of growth cone forces applied to beads at low stiffness of restraint revealed switching between two states: frictional coupling to retrograde flow and Arp2/3-dependent propulsion. Stiff mechanical restraint led to formation of an extensive actin cup matching the geometric profile of the bead target and forward growth cone translocation; pharmacological inhibition of the Arp2/3 complex or Rac attenuated F-actin assembly near bead binding sites, decreased the efficacy of growth responses, and blocked accumulation of signaling molecules associated with nascent adhesions. These studies introduce a new model for regulation of traction force in which local actin assembly forces buffer nascent adhesion sites from the mechanical effects of retrograde flow.


Friday, February 24, 2017

Biophysical Characterization of Flagellar Motor Functions

Katie M. Ford, Ravi Chawla, Pushkar P. Lele

The role of flagellar motors in bacterial motility and chemotaxis is well-understood. Recent discoveries suggest that flagellar motors are able to remodel in response to a variety of environmental stimuli and are among the triggers for surface colonization and infections. The precise mechanisms by which motors remodel and promote cellular adaptation likely depend on key motor attributes. The photomultiplier-based bead-tracking technique presented here enables accurate biophysical characterization of motor functions, including adaptations in motor speeds and switch-dynamics. This approach offers the advantage of real-time tracking and the ability to probe motor behavior over extended durations. The protocols discussed can be readily extended to study flagellar motors in a variety of bacterial species.


Single molecule detection, thermal fluctuation and life

Toshio YANAGIDA, Yoshiharu ISHII

Single molecule detection has contributed to our understanding of the unique mechanisms of life. Unlike artificial man-made machines, biological molecular machines integrate thermal noises rather than avoid them. For example, single molecule detection has demonstrated that myosin motors undergo biased Brownian motion for stepwise movement and that single protein molecules spontaneously change their conformation, for switching to interactions with other proteins, in response to thermal fluctuation. Thus, molecular machines have flexibility and efficiency not seen in artificial machines.


Optical torque on a magneto-dielectric Rayleigh absorptive sphere by a vector Bessel (vortex) beam

Renxian Li, Ruiping Yang, Chunying Ding, F.G. Mitri

The optical torque exerted on an absorptive megneto-dielectric sphere by an axicon-generated vector Bessel (vortex) beam with selected polarizations is investigated in the framework of the dipole approximation. The total optical torque is expressed as the sum of orbital and spin torques. The axial orbital torque component is calculated from the z -component of the cross-product of the vector position r and the optical force exerted on the sphere F. Depending on the beam characteristics (such as the half-cone angle and polarization type) and the physical properties of the sphere, it is shown here that the axial orbital torque vanishes before reversing sign, indicating a counter-intuitive orbital motion in opposite handedness of the angular momentum carried by the incident waves. Moreover, analytical formulas for the spin torque, which is divided into spin torques induced by electric and magnetic dipoles, are derived. The corresponding components of both the optical spin and orbital torques are numerically calculated, and the effects of polarization, the order of the beam, and half-cone angle are discussed in detail. The left-handed (i.e., negative) optical torque is discussed, and the conditions for generating optical spin and orbital torque sign reversal are numerically investigated. The transverse optical spin torque has a vortex-like character, whose direction depends on the polarization, the half-cone angle, and the order of the beam. Numerical results also show that the vortex direction depends on the radial position of the particle in the transverse plane. This means that a sphere may rotate with different directions when it moves radially. Potential applications are in particle manipulation and rotation, single beam optical tweezers, and other emergent technologies using vector Bessel beams on a small magneto-dielectric (nano) particle.


Self-Aligned Trapping and Detecting Molecules Using a Plasmonic Tweezer with an Integrated Electrostatic Cell

Zhongbo Yan, Ming Xia, Pei Zhang, Ya-Hong Xie

Surface plasmonic tweezers and electrostatic forces can be employed as complementary methods for trapping and detecting molecules with high sensitivity and selectivity. The hotspots—localized regions of highly concentrated electromagnetic fields with large gradients—give rise to both the plasmonic tweezer effect and the surface-enhanced Raman scattering (SERS) effect. So naturally, combining plasmonic tweezers and SERS makes for an ideal label-free method for trapping and detecting molecules. Here, the trapping effect of the plasmonic tweezer is demonstrated by using the unique graphene–Au pyramid hybrid platform. While very powerful, the force associated with plasmonic tweezers is a short-range effect (<50 nm from the spot of peak intensity). The electrostatic force, on the other hand, has long-range interaction extending to beyond micrometers, which can guide molecules toward the hotspots. The authors present experimental evidence showing the combination of plasmonic tweezers and electrostatic forces by using an integrated electrostatic cell. Using the combined platform, trapping of single molecules in dilute solution is observed. These observations indicate a new approach for enhancing SERS sensitivity. It also offers a realistic possibility for precisely positional control of biomolecules, allowing the study of the properties of single biomolecules.


2-D evanescent trapping of colloids in the vicinity of a micrometer waveguide

O. Emile, J. Emile and H. Tabuteau

We report on the trapping of micrometer colloids using the evanescent wave from a multimode cylindrical optical waveguide. We show that the particle trapping is a two-step process. With a low-power visible laser injected in the device, particles are first captured at a radial distance twice greater than the diameter of the waveguide and then drawn near to it. In a second time particles turn around the waveguide and get trapped in a direction corresponding to the TM polarization of the laser. Such a device could be easily implemented in microfluidic systems in order to coat surfaces or to control particles deposition and assembly. Conversely, it could find applications in the filtration process to aggregate and remove colloidal pollutants.


Monday, February 20, 2017

Single molecule force spectroscopy reveals the effect of BiP chaperone on protein folding

María Paz Ramírez, Maira Rivera, Diego Quiroga-Roger, Andrés Bustamante, Marcela Vega, Mauricio Baez, Elias M. Puchner, Christian A.M. Wilson

BiP (Immunoglobulin Binding Protein) is a member of the Hsp70 chaperones that participates in protein folding in the endoplasmic reticulum. The function of BiP relies on cycles of ATP hydrolysis driving the binding and release of its substrate proteins. It still remains unknown how BiP affects the protein folding pathway and there has been no direct demonstration showing which folding state of the substrate protein is bound by BiP, as previous work has used only peptides. Here, we employ optical tweezers for single molecule force spectroscopy experiments to investigate how BiP affects the folding mechanism of a complete protein and how this effect depends on nucleotides. Using the protein MJ0366 as the substrate for BiP, we performed pulling and relaxing cycles at constant velocity to unfold and refold the substrate. In the absence of BiP, MJ0366 unfolded and refolded in every cycle. However, when BiP was added, the frequency of folding events of MJ0366 significantly decreased, and the loss of folding always occurred after a successful unfolding event. This process was dependent on ATP and ADP, since when either ATP was decreased or ADP was added, the duration of periods without folding events increased. Our results show that the affinity of BiP for the substrate protein increased in these conditions, which correlates with previous studies in bulk. Therefore, we conclude that BiP binds to the unfolded state of MJ0366 and prevents its refolding, and that this effect is dependent on both the type and concentration of nucleotides.


Holographic optical tweezers-based in vivo manipulations in zebrafish embryos

Florian Hörner, Robert Meissner, Sruthi Polali, Jana Pfeiffer, Timo Betz, Cornelia Denz, Erez Raz

Understanding embryonic development requires the characterization of the forces and the mechanical features that shape cells and tissues within the organism. In addition, experimental application of forces on cells and altering cell and organelle shape allows determining the role such forces play in morphogenesis. Here, we present a holographic optical tweezers-based new microscopic platform for in vivo applications in the context of a developing vertebrate embryo that unlike currently used setups allows simultaneous trapping of multiple objects and rapid comparisons of viscoelastic properties in different locations. This non-invasive technique facilitates a dynamic analysis of mechanical properties of cells and tissues without intervening with embryonic development. We demonstrate the application of this platform for manipulating organelle shape and for characterizing the mechanobiological properties of cells in live zebrafish embryos. The method of holographic optical tweezers as described here is of general interest and can be easily transferred to studying a range of developmental processes in zebrafish, thereby establishing a versatile platform for similar investigations in other organisms.


Microfluidics cell sample preparation for analysis: Advances in efficient cell enrichment and precise single cell capture

Liang Huang, Shengtai Bian, Yinuo Cheng, Guanya Shi, Peng Liu, Xiongying Ye, Wenhui Wang

Single cell analysis has received increasing attention recently in both academia and clinics, and there is an urgent need for effective upstream cell sample preparation. Two extremely challenging tasks in cell sample preparation—high-efficiency cell enrichment and precise single cell capture—have now entered into an era full of exciting technological advances, which are mostly enabled by microfluidics. In this review, we summarize the category of technologies that provide new solutions and creative insights into the two tasks of cell manipulation, with a focus on the latest development in the recent five years by highlighting the representative works. By doing so, we aim both to outline the framework and to showcase example applications of each task. In most cases for cell enrichment, we take circulating tumor cells (CTCs) as the target cells because of their research and clinical importance in cancer. For single cell capture, we review related technologies for many kinds of target cells because the technologies are supposed to be more universal to all cells rather than CTCs. Most of the mentioned technologies can be used for both cell enrichment and precise single cell capture. Each technology has its own advantages and specific challenges, which provide opportunities for researchers in their own area. Overall, these technologies have shown great promise and now evolve into real clinical applications.


Elastic back-scattering patterns via particle surface roughness and orientation from single trapped airborne aerosol particles

Richard Fu, Chuji Wang, Olga Muñoz, Gorden Videen, Joshua L. Santarpia, Yong-Le Pan

We demonstrate a method for simultaneously measuring the back-scattering patterns and images of single laser-trapped airborne aerosol particles. This arrangement allows us to observe how the back-scattering patterns change with particle size, shape, surface roughness, orientation, etc. The recoded scattering patterns cover the angular ranges of θ=167.7–180° (including at 180° exactly) and ϕ=0–360° in spherical coordinates. The patterns show that the width of the average speckle intensity islands or rings is inversely proportional to particle size and how the shape of these intensity rings or islands also depends on the surface roughness. For an irregularly shaped particle with substantial roughness, the back-scattering patterns are formed with speckle intensity islands, the size and orientations of these islands depend more on the overall particle size and orientation, but have less relevance to the fine alteration of the surface structure and shapes. The back-scattering intensity at 180° is very sensitive to the particle parameters. It can change from a maximum to a minimum with a change of 0.1% in particle size or refractive index. The method has potential use in characterizing airborne aerosol particles, and may be used to provide back-scattering information for LIDAR applications.


The role of cyclic di-GMP and exopolysaccharide in type IV pilus dynamics

Jan Ribbe, Amy E. Baker, Sebstian Euler, George A. O'Toole and Berenike Maier

For Pseudomonas aeruginosa the levels of cyclic di-GMP govern the transition from the planktonic state to biofilm formation. Type IV pili (T4P) are crucial determinants of biofilm structure and dynamics, but it is unknown how the levels of c-di-GMP affect pilus dynamics. Here, we scrutinized how c-di-GMP affects molecular motor properties and adhesive behavior of T4P. By means of retraction, T4P generated forces of ∼ 30 pN. Deletion mutants in the proteins with known roles in biofilm formation, swarming motility and exopolysaccharide (EPS) production, specifically, the diguanulate cyclases sadC and roeA or the c-di-GMP phosphodiesterase bifA, showed only modest effects on velocity or force of T4P retraction. At high levels of c-di-GMP, the production of exopolysaccharides (EPS) and in particular of Pel is upregulated. We found that Pel production strongly enhances T4P-mediated surface adhesion of P. aeruginosa, suggesting that that T4P — matrix interactions may be involved in biofilm formation by P. aeruginosa. Finally, our data are consistent with the previously proposed sling-shot-like “twitching” motility of P. aeruginosa.


Friday, February 17, 2017

Measurement of laterally induced optical forces at the nanoscale

Fei Huang, Venkata Ananth Tamma, Mohsen Rajaei, Mohammad Almajhadi, and H. Kumar Wickramasinghe

We demonstrate the measurement of laterally induced optical forces using an Atomic Force Microscope (AFM). The lateral electric field distribution between a gold coated AFM probe and a single nano-aperture in a gold film is mapped by measuring the lateral optical force between the apex of the AFM probe and the nano-aperture. The fundamental torsional eigen-mode of an AFM cantilever probe was used to detect the laterally induced optical forces. We engineered the cantilever shape using focused ion beam milling to improve the detected signal to noise ratio. The measured distributions of lateral optical force agree well with electromagnetic simulations of the metal coated AFM probe interacting with the nano-aperture. This technique can be extended to simultaneously detect both lateral and longitudinal optical forces at the nanoscale by using an AFM cantilever as a multi-channel detector. This will enable simultaneous Photon Induced Force Microscopy detection of molecular responses with different incident field polarizations. The technique can be implemented on both cantilever and tuning fork based AFMs.


Force-Dependent Folding and Unfolding Kinetics in DNA Hairpins Reveals Transition-State Displacements along a Single Pathway

Anna Alemany and Felix Ritort

Biomolecules diffusively explore their energy landscape overcoming energy barriers via thermally activated processes to reach the biologically relevant conformation. Mechanically induced unfolding and folding reactions offer an excellent playground to feature these processes at the single-molecule level by monitoring changes in the molecular extension. Here we investigate two-state DNA hairpins designed to have the transition states at different locations. We use optical tweezers to characterize the force-dependent behavior of the kinetic barrier from nonequilibrium pulling experiments by using the continuous effective barrier approach (CEBA). We introduce the mechanical fragility and the molecular transition-state susceptibility, both useful quantities to characterize the response of the transition state to an applied force. Our results demonstrate the validity of the Leffler–Hammond postulate where the transition state approaches the folded state as force increases, implying monotonically decreasing fragility with force and a non-negative transition state susceptibility at all forces.


Photon-phonon Interaction in a Microfiber Induced by Optical and Electrostrictive Forces

Yun-chao Shi, Wei Luo, Fei Xu & Yan-qing Lu

Stimulated Brillouin scattering (SBS) via electrostrictive force is a fundamental interaction between light and sound which limits the power in conventional optical fibers. The emergence of optical microfibers with subwavelength diameter, ultralight mass and an intense light field, provides a new platform for photon–phonon coupling, resulting in the radiation pressure mediated contribution of SBS. This study examines the optomechanical system in cylindrical coordinates, reveals the theoretically radiation pressure induced analogous, and demonstrates contrary effect compared with electrostrictive force in solid or hollow silica microfibers. The finding shows that the photon-phonon coupling, which is related to SBS, can be suppressed in a solid microfiber, and even be completely cancelled in a hollow microfiber.


Unfolding DNA condensates produced by DNA-like charged depletants: A force spectroscopy study

C. H. M. Lima, M. S. Rocha, and E. B. Ramos

In this work, we have measured, by means of optical tweezers, forces acting on depletion-induced DNA condensates due to the presence of the DNA-like charged protein bovine serum albumin (BSA). The stretching and unfolding measurements performed on the semi-flexible DNA chain reveal (1) the softening of the uncondensed DNA contour length and (2) a mechanical behavior strikingly different from those previously observed: the force-extension curves of BSA-induced DNA condensates lack the “saw-tooth” pattern and applied external forces as high as ≈80pN≈80 pN are unable to fully unfold the condensed DNA contour length. This last mechanical experimental finding is in agreement with force-induced “unpacking” detailed Langevin dynamics simulations recently performed by Cortini et al. on model rod-like shaped condensates. Furthermore, a simple thermodynamics analysis of the unfolding process has enabled us to estimate the free energy involved in the DNA condensation: the estimated depletion-induced interactions vary linearly with both the condensed DNA contour length and the BSA concentration, in agreement with the analytical and numerical analysis performed on model DNA condensates. We hope that future additional experiments can decide whether the rod-like morphology is the actual one we are dealing with (e.g. pulling experiments coupled with super-resolution fluorescence microscopy).


Oscillations of absorbing particles at the water-air interface induced by laser tweezers

Min-Cheng Zhong, Zi-Qiang Wang, and Yin-Mei Li

We present an experimental study on oscillation of absorbing particles at the water-air interface. The oscillation is induced by laser tweezers, which are generated with a high numerical aperture objective. When the laser beam is tightly focused at the water-air interface, the optical gradient force attracts the particles to the spot center, and the laser heating of particles results in a strong thermal gradient that drives the particles to leave the spot center. Under the action of thermal and optical gradient force together, the absorbing particles oscillate at the water-air interface.